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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11791325_11792115_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11791325 - 11792115
Intron Length:
791

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
AAG|GCATGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCACCTTCCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTCAC
U12 Branch Point Sequence:
GTTTCTTTCACC
Flanking Amino Acid:
GYQIRLESVKSSATRLLYCT
Intron Amino Acid Position:
626

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.4
0.95
0.9
81.8
38.5
Major BPS
77.7
0.69
1
81
30.2
Major PPT
77.2
0.61
0.8
68.9
36.9
Minor 5ss
35.1
-1.7
3.8
50.1
46.4
Minor BPS
69.7
0.6
1.7
78.83
36.8

Associated Gene:

Gene:
DHX57
Ensembl Gene ID:
ENSAPLG00000011333
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011838
11785705 - 11803976
18272