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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11796401_11796756_F

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11796401 - 11796756
Intron Length:
356

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATTTCA
5'SS Class:
strong_major
3'SS Sequence:
TTGACATATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TATCTTTTAAAT
Flanking Amino Acid:
IVAGKHSYPPGAVLVFLPGL
Intron Amino Acid Position:
837

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
79.6
29.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
66.3
0.37
1
63.7
42
Minor 5ss
40.6
-1.1
2.7
51.2
45.1
Minor BPS
66.9
0.61
1.3
79.65
35.7

Associated Gene:

Gene:
DHX57
Ensembl Gene ID:
ENSAPLG00000011333
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011838
11785705 - 11803976
18272