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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11796854_11797582_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11796854 - 11797582
Intron Length:
729

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCAG
5'SS Class:
strong_major
3'SS Sequence:
ACTTCTCCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GCTCTCATACTT
Flanking Amino Acid:
NALFNNRHSTRCVVYPLHSS
Intron Amino Acid Position:
869

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
69.6
42.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
79.5
0.66
0.8
70.3
35.7
Minor 5ss
30.1
-2.3
3.2
37.6
47.1
Minor BPS
46.2
-0.2
1.8
62.4
41.9

Associated Gene:

Gene:
DHX57
Ensembl Gene ID:
ENSAPLG00000011333
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011838
11785705 - 11803976
18272