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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11797757_11797948_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11797757 - 11797948
Intron Length:
192

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTGGGA
5'SS Class:
major
3'SS Sequence:
TGCTCTCCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAA
U12 Branch Point Sequence:
TGCTTCTGAATG
Flanking Amino Acid:
VIDSGKMKEKRYDPSKGMES
Intron Amino Acid Position:
927

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.5
0.44
1.1
57
42.1
Major BPS
82.1
0.8
0.8
71.6
36.4
Major PPT
74.5
0.55
0.8
66.4
35.8
Minor 5ss
27.6
-2.6
3.6
38.7
46.4
Minor BPS
58.7
0.14
1.5
60.39
41.9

Associated Gene:

Gene:
DHX57
Ensembl Gene ID:
ENSAPLG00000011333
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011838
11785705 - 11803976
18272