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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11798150_11798568_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11798150 - 11798568
Intron Length:
419

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGTT
5'SS Class:
strong_major
3'SS Sequence:
TTCCCTCCTTAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
TTCTTTTTAATT
Flanking Amino Acid:
QRVPLEQLCLRIKILEMFSA
Intron Amino Acid Position:
994

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
94.1
1.04
0.7
90.4
20.6
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
71.9
0.49
1
75.7
26.9
Minor 5ss
33.2
-1.9
3.4
48.7
47.5
Minor BPS
78
0.96
1
86.64
33.8

Associated Gene:

Gene:
DHX57
Ensembl Gene ID:
ENSAPLG00000011333
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011838
11785705 - 11803976
18272