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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11800065_11800161_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11800065 - 11800161
Intron Length:
97

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCTAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTCAATTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
ATCCTCTCAATT
Flanking Amino Acid:
DYLALLQAYKGWRLSTKEGS
Intron Amino Acid Position:
1119

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.3
30.6
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
66.8
0.38
0.9
67.3
32.9
Minor 5ss
37.7
-1.4
3
46.2
49.1
Minor BPS
57.8
0.32
1.5
71.65
39.6

Associated Gene:

Gene:
DHX57
Ensembl Gene ID:
ENSAPLG00000011333
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011838
11785705 - 11803976
18272