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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11800246_11800393_F

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11800246 - 11800393
Intron Length:
148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGCTTGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATGCAT
U12 Branch Point Sequence:
TCATGCATCACC
Flanking Amino Acid:
ENFLSGRVLQEIASLKRQFT
Intron Amino Acid Position:
1147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.1
1.06
0.7
83.2
30.8
Major BPS
54.9
0.12
1.4
67
39.8
Major PPT
82
0.72
0.8
77.2
31.5
Minor 5ss
33.5
-1.9
2.9
40.7
45.5
Minor BPS
45
-0.4
2.4
59.8
45.1

Associated Gene:

Gene:
DHX57
Ensembl Gene ID:
ENSAPLG00000011333
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011838
11785705 - 11803976
18272