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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11800962_11801435_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11800962 - 11801435
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAAAGAA
5'SS Class:
strong_major
3'SS Sequence:
TCCTACCTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCAAAA
U12 Branch Point Sequence:
TTCTCCAAAATT
Flanking Amino Acid:
CAALYPNVVQVKKPEGKYQK
Intron Amino Acid Position:
1218

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
73.7
30.1
Major BPS
55.5
0.14
1
61.5
32.5
Major PPT
79.4
0.66
0.8
72.2
32.2
Minor 5ss
29.1
-2.4
3.4
37.8
47
Minor BPS
59
0.36
2
80.51
41.8

Associated Gene:

Gene:
DHX57
Ensembl Gene ID:
ENSAPLG00000011333
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011838
11785705 - 11803976
18272