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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11801571_11802536_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11801571 - 11802536
Intron Length:
966

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGGATT
5'SS Class:
major
3'SS Sequence:
TCTGCCGTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAC
U12 Branch Point Sequence:
TTAACCACAGCC
Flanking Amino Acid:
HIHPSSVNYQTRHFESPYLV
Intron Amino Acid Position:
1263

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1.3
82.5
37
Major BPS
65.7
0.39
1.1
67.4
36.7
Major PPT
75
0.56
0.9
65.2
41.1
Minor 5ss
33.6
-1.9
3.3
48.8
47
Minor BPS
45.9
-0.3
2
62.11
42.4

Associated Gene:

Gene:
DHX57
Ensembl Gene ID:
ENSAPLG00000011333
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011838
11785705 - 11803976
18272