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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11809948_11810133_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11809948 - 11810133
Intron Length:
186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGTG
5'SS Class:
strong_major
3'SS Sequence:
CAAAACCTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
ACTATCTTAATA
Flanking Amino Acid:
CHRYSRRRRSRFLRLSQSP*
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
76.4
39.6
Major BPS
80
0.75
1
78.6
31
Major PPT
65
0.34
1
58.9
42
Minor 5ss
35.2
-1.7
3.5
48.8
47.4
Minor BPS
68.1
0.56
1.2
69.83
36.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012615
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013127
11809920 - 11810996
1077