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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11810311_11810420_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11810311 - 11810420
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTACGTGTG
5'SS Class:
major
3'SS Sequence:
CTGTGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
ATTCTTGTGACT
Flanking Amino Acid:
AEDAVLGLDGKIICGSRVRV
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
70.1
40.8
Major BPS
71.6
0.54
1
72
33.1
Major PPT
75.1
0.56
1
68.6
42
Minor 5ss
36.9
-1.5
3.5
48.7
41.9
Minor BPS
49.7
0.06
2
73.89
37.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012615
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013127
11809920 - 11810996
1077
ENSAPLT00000012704
11808735 - 11810996
2262