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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11815986_11816173_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11815986 - 11816173
Intron Length:
188

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAA|GTACGTGAG
5'SS Class:
major
3'SS Sequence:
TGTCTTGTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AGTTAAC
U12 Branch Point Sequence:
TAGCAGTTAACT
Flanking Amino Acid:
AEDAVRGLDGKVICGSRVRV
Intron Amino Acid Position:
70

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.9
0.59
1.1
66.2
39.8
Major BPS
65.7
0.39
1.1
67.4
36.7
Major PPT
78.8
0.65
0.9
77.1
37.1
Minor 5ss
32.7
-2
3.4
39.6
40.7
Minor BPS
49.8
0.06
2.2
71.9
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012167
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013031
11814504 - 11821444
6941