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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11816351_11817234_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
11816351 - 11817234
Intron Length:
884

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGTGTG
5'SS Class:
strong_major
3'SS Sequence:
AACCTAAACCCAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TTTTCTCCAACC
Flanking Amino Acid:
CHRYSRRRRSRSRSRSRSRS
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.3
0.85
0.9
76.4
39.6
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
55.2
0.12
1
44.9
39.7
Minor 5ss
35.2
-1.7
3.5
48.8
47.4
Minor BPS
62.4
0.37
1.9
79.53
35.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012167
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013031
11814504 - 11821444
6941