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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11817310_11817415_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11817310 - 11817415
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATGCTTA
5'SS Class:
strong_major
3'SS Sequence:
GGTTTCTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
CCTTACTCAACT
Flanking Amino Acid:
SRSRSRSRGRRSRSASYRRS
Intron Amino Acid Position:
154

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
76.7
34.9
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
83.2
0.75
0.9
77.1
37.1
Minor 5ss
62.3
0.42
2.3
73
44
Minor BPS
61.4
0.44
1.8
77.18
45

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012167
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013031
11814504 - 11821444
6941