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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11820184_11820723_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11820184 - 11820723
Intron Length:
540

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCATA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTTGACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TCTGTTTTGACA
Flanking Amino Acid:
GRSKSGSPAKSRSKSRSPSP
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
83.2
30.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
78.7
0.64
1
75.5
38.3
Minor 5ss
37.5
-1.4
3
48.1
47.6
Minor BPS
62.2
0.38
1.4
68.82
38.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012167
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013031
11814504 - 11821444
6941