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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11820760_11821389_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11820760 - 11821389
Intron Length:
630

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTTGG
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCCTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTCAA
U12 Branch Point Sequence:
CAAATGTTAACT
Flanking Amino Acid:
SKSRSPSPKRSRSPSGSPQR
Intron Amino Acid Position:
233

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
1
69.9
43.4
Major BPS
77.9
0.69
0.8
77.9
25.8
Major PPT
87.6
0.85
0.6
85
22.6
Minor 5ss
38.5
-1.3
3
49.7
46.5
Minor BPS
49.3
0.03
2.1
66.25
44.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000012167
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013031
11814504 - 11821444
6941