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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11824298_11824372_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11824298 - 11824372
Intron Length:
75

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGGCCG
5'SS Class:
major
3'SS Sequence:
TTGCCTCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGGCAT
U12 Branch Point Sequence:
GTGCCCACACCA
Flanking Amino Acid:
PPGRARRLVARAHHPPTGRT
Intron Amino Acid Position:
261

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.7
0.63
1.1
57.9
46.7
Major BPS
49
-0
1.5
60.7
45.9
Major PPT
75.1
0.57
0.8
69.7
31
Minor 5ss
29.7
-2.3
3.4
38.8
46.5
Minor BPS
43.4
-0.5
2
55.23
43

Associated Gene:

Gene:
GALM
Ensembl Gene ID:
ENSAPLG00000012617
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013166
11823883 - 11829059
5177