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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11857558_11857645_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11857558 - 11857645
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAATGCTT
5'SS Class:
major
3'SS Sequence:
TTTATTTGAACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTACTTTATTT
Flanking Amino Acid:
CCTLKIEYARPTRLNVIRND
Intron Amino Acid Position:
139

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
66.2
44.9
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
76.1
0.59
1
73.4
40.7
Minor 5ss
36.3
-1.6
3.5
48.3
47.3
Minor BPS
67.5
0.63
1.6
84.37
36.8

Associated Gene:

Gene:
HNRNPLL
Ensembl Gene ID:
ENSAPLG00000013082
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000018730
11850206 - 11865581
15376
ENSAPLT00000013650
11850206 - 11867161
16956