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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11865442_11867105_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11865442 - 11867105
Intron Length:
1664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TGTTTCCTGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTTAC
U12 Branch Point Sequence:
TGTTTCCTGACA
Flanking Amino Acid:
VLNHYQIRVPNGSNPYTLKL
Intron Amino Acid Position:
420

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
1
71.6
40.1
Major BPS
65.2
0.38
1
57.3
39.1
Major PPT
77
0.61
1
73
37.5
Minor 5ss
35.3
-1.7
2.9
41.6
39
Minor BPS
63.5
0.42
1.7
75.78
34.8

Associated Gene:

Gene:
HNRNPLL
Ensembl Gene ID:
ENSAPLG00000013082
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013650
11850206 - 11867161
16956