About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11905993_11907406_F

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
11905993 - 11907406
Intron Length:
1414

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCGCT
5'SS Class:
strong_major
3'SS Sequence:
CAAAACTCTCTAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCTTCAA
U12 Branch Point Sequence:
ACTTGGTTAACT
Flanking Amino Acid:
FVIDKPNGTKVAVLLMDTQG
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.94
0.9
78.8
35.5
Major BPS
78.2
0.7
1
79.9
32.6
Major PPT
58.7
0.2
1
47.8
40.7
Minor 5ss
39
-1.2
3.4
56.7
47.6
Minor BPS
54.2
0.21
2.4
77.84
44.7

Associated Gene:

Gene:
ATL2
Ensembl Gene ID:
ENSAPLG00000013640
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014294
11884971 - 11922142
37172