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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11907512_11908606_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11907512 - 11908606
Intron Length:
1095

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
CTGTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAT
U12 Branch Point Sequence:
AATTCCTTTACT
Flanking Amino Acid:
ALSTMTSSVQVYNLSQNIQE
Intron Amino Acid Position:
195

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
99.5
1.23
0.5
98.2
4.2
Major PPT
82.3
0.73
0.8
76.1
32.6
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
76.4
0.91
1.5
87.87
37

Associated Gene:

Gene:
ATL2
Ensembl Gene ID:
ENSAPLG00000013640
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014294
11884971 - 11922142
37172