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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11912363_11913160_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11912363 - 11913160
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAGGAAGC
5'SS Class:
major
3'SS Sequence:
TGACTTTTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
GTTTTCTGACTT
Flanking Amino Acid:
TNPNFDGRLNDIDEDFKKEL
Intron Amino Acid Position:
308

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.1
0.55
1.1
62.5
42.3
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
68.9
0.43
1
63.1
42.8
Minor 5ss
32.6
-2
3.2
40
40.9
Minor BPS
57.7
0.32
1.7
77.06
39.7

Associated Gene:

Gene:
ATL2
Ensembl Gene ID:
ENSAPLG00000013640
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014294
11884971 - 11922142
37172