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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11913289_11915627_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11913289 - 11915627
Intron Length:
2339

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTCCATTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TTTTTCTTATTT
Flanking Amino Acid:
TCRDLVEYFKAYIKIYQGEE
Intron Amino Acid Position:
351

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.1
0.97
0.8
83.2
30.8
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
76.3
0.59
0.9
75.3
34.6
Minor 5ss
38.7
-1.3
2.8
48.1
47.6
Minor BPS
75.8
0.89
1.5
91.23
32.5

Associated Gene:

Gene:
ATL2
Ensembl Gene ID:
ENSAPLG00000013640
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014294
11884971 - 11922142
37172