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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11917008_11919610_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11917008 - 11919610
Intron Length:
2603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGATAA
5'SS Class:
strong_major
3'SS Sequence:
ATTATTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTGAT
U12 Branch Point Sequence:
TTATTCCTACAG
Flanking Amino Acid:
KDLYSKGMEQICGGDKPYIA
Intron Amino Acid Position:
394

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84
0.8
0.9
75.7
29.3
Major BPS
79
0.72
1
69
38.9
Major PPT
80.7
0.69
0.8
73.8
36.2
Minor 5ss
43.3
-0.7
2.8
55.5
48.7
Minor BPS
46.6
-0.4
2
57.91
43.3

Associated Gene:

Gene:
ATL2
Ensembl Gene ID:
ENSAPLG00000013640
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014294
11884971 - 11922142
37172