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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11925898_11926120_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11925898 - 11926120
Intron Length:
223

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGCATG
5'SS Class:
major
3'SS Sequence:
TCTCTCGTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTC
Flanking Amino Acid:
STQIDEMPMNVADLI*
Intron Amino Acid Position:
443

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
69.1
43.2
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
82.9
0.74
0.8
80.3
31.7
Minor 5ss
38
-1.3
3
49.5
46.5
Minor BPS
72.6
0.69
1.5
81.59
33

Associated Gene:

Gene:
EIF4A3
Ensembl Gene ID:
ENSAPLG00000014717
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015383
11925881 - 11933108
7228