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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11927677_11928374_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11927677 - 11928374
Intron Length:
698

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCCCCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACGTTAC
U12 Branch Point Sequence:
TTCTCCCCTACA
Flanking Amino Acid:
MTDPIRILVKRDELTLEGIK
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
84.3
29.3
Major BPS
50.1
0
1.2
43.1
39.2
Major PPT
83.1
0.75
0.7
76.9
25.3
Minor 5ss
41.2
-1
3
59
45.5
Minor BPS
48.7
-0.1
2.2
68.81
43

Associated Gene:

Gene:
EIF4A3
Ensembl Gene ID:
ENSAPLG00000014717
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015383
11925881 - 11933108
7228