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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11928517_11928895_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11928517 - 11928895
Intron Length:
379

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAAGCAA
5'SS Class:
major
3'SS Sequence:
TTTGCTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACCTGAT
U12 Branch Point Sequence:
GCTACCTGATTT
Flanking Amino Acid:
LDEADEMLNKGFKEQIYDVY
Intron Amino Acid Position:
232

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1
68.2
38.4
Major BPS
70
0.5
1
59.3
39.1
Major PPT
89.3
0.88
0.7
84.5
30.4
Minor 5ss
29.4
-2.4
3.3
37.9
46.9
Minor BPS
49.5
0.04
1.8
66.45
44.1

Associated Gene:

Gene:
EIF4A3
Ensembl Gene ID:
ENSAPLG00000014717
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015383
11925881 - 11933108
7228