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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11930627_11931638_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11930627 - 11931638
Intron Length:
1012

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTTCA
5'SS Class:
strong_major
3'SS Sequence:
CTGTTCTTGTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACGTGAC
U12 Branch Point Sequence:
TGCCACGTGACC
Flanking Amino Acid:
ISVLQCLDIQVRETQALILA
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
1.1
77.7
33.5
Major BPS
50
0
1.2
42.7
39.5
Major PPT
76.7
0.6
1
76.7
37.4
Minor 5ss
46
-0.4
2.5
59.7
44.7
Minor BPS
45.1
-0.4
2.2
57.14
41.4

Associated Gene:

Gene:
EIF4A3
Ensembl Gene ID:
ENSAPLG00000014717
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015383
11925881 - 11933108
7228