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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11947104_11947414_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11947104 - 11947414
Intron Length:
311

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTGAGTGCT
5'SS Class:
major
3'SS Sequence:
GTTCTTGCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGTGAA
U12 Branch Point Sequence:
GGTTCTTGCCCC
Flanking Amino Acid:
AEPALHRGLSVRPVAADPSA
Intron Amino Acid Position:
1014

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.5
1.1
68.2
36.6
Major BPS
56.9
0.17
1.3
49.1
46.3
Major PPT
73.9
0.54
0.9
65.4
41.1
Minor 5ss
32.8
-2
3.3
51.5
44.9
Minor BPS
36.7
-1
3.5
56.48
42

Associated Gene:

Gene:
SLC8A1
Ensembl Gene ID:
ENSAPLG00000015670
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031245
11947017 - 12053608
106592
ENSAPLT00000019533
11947013 - 12053608
106596
ENSAPLT00000016363
11947017 - 12044735
97719