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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11947654_11957473_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11947654 - 11957473
Intron Length:
9820

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCTGG
5'SS Class:
strong_major
3'SS Sequence:
TCCGGTGCTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAC
U12 Branch Point Sequence:
TCGTCCTCACCG
Flanking Amino Acid:
LLYRRRPEIGGGGAAAGAGG
Intron Amino Acid Position:
960

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83
0.78
0.9
65.8
42.7
Major BPS
72.4
0.56
1
73.5
32.5
Major PPT
68.4
0.41
1
60.9
40.2
Minor 5ss
37.8
-1.4
3
46.8
48.5
Minor BPS
51.8
-0
2
59.2
48.3

Associated Gene:

Gene:
SLC8A1
Ensembl Gene ID:
ENSAPLG00000015670
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031245
11947017 - 12053608
106592
ENSAPLT00000024777
11947013 - 12053608
106596
ENSAPLT00000019533
11947013 - 12053608
106596
ENSAPLT00000016363
11947017 - 12044735
97719