Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_1194935_1198623_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

1194935 - 1198623

Intron Length:

3689

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGAGTG

5'SS Class:

strong_major

3'SS Sequence:

AATATTTTTATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAA

U12 Branch Point Sequence:

ATTTAGTTAAAT

Flanking Amino Acid:

KLGICCLVGEGFSLAAFKRN

Intron Amino Acid Position:

189

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.87

0.8

35.2

Major BPS

87.2

0.92

0.8

77.7

37.1

Major PPT

75.8

0.58

0.9

69.7

40.6

Minor 5ss

28.6

-2.5

3.4

37.5

47.2

Minor BPS

0.24

2.3

40.1

Associated Gene:

Gene:

TASP1

Ensembl Gene ID:

ENSAPLG00000011487

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038158

1148624 - 1230576

81953