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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11957732_11959302_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11957732 - 11959302
Intron Length:
1571

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGGCA
5'SS Class:
strong_major
3'SS Sequence:
CTTCCCCTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CCCTGAG
U12 Branch Point Sequence:
TGTTCCCTGAGG
Flanking Amino Acid:
VFVALGTSVPDTFASKVAAT
Intron Amino Acid Position:
874

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.3
0.93
0.9
75.8
33.8
Major BPS
47
-0.1
1.5
42.6
40.4
Major PPT
83.1
0.74
0.7
76.9
25
Minor 5ss
29.5
-2.3
3.4
38.8
46.5
Minor BPS
51.7
-0
2.1
64.44
43.3

Associated Gene:

Gene:
SLC8A1
Ensembl Gene ID:
ENSAPLG00000015670
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024777
11947013 - 12053608
106596
ENSAPLT00000019533
11947013 - 12053608
106596
ENSAPLT00000016363
11947017 - 12044735
97719
ENSAPLT00000031245
11947017 - 12053608
106592