About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11959579_11962670_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11959579 - 11962670
Intron Length:
3092

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTGAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TGGTTTTCTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTGAA
U12 Branch Point Sequence:
GAGCAACTAACC
Flanking Amino Acid:
QFIEAITVSAGEDDDDDECG
Intron Amino Acid Position:
782

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.3
0.81
0.9
80.2
30.7
Major BPS
70.6
0.51
0.9
61.4
36.2
Major PPT
81.6
0.71
0.9
73.6
41.8
Minor 5ss
37.9
-1.4
2.9
40.8
45.4
Minor BPS
42
-0.6
2
49.68
39.2

Associated Gene:

Gene:
SLC8A1
Ensembl Gene ID:
ENSAPLG00000015670
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031245
11947017 - 12053608
106592
ENSAPLT00000024777
11947013 - 12053608
106596
ENSAPLT00000019533
11947013 - 12053608
106596
ENSAPLT00000016363
11947017 - 12044735
97719