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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11962771_11963560_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
11962771 - 11963560
Intron Length:
790

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACCACCC
5'SS Class:
major
3'SS Sequence:
TCTCCATCTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTAAT
U12 Branch Point Sequence:
TAGCCCCTAATT
Flanking Amino Acid:
VIIEESYEFKNTVDKLIKKT
Intron Amino Acid Position:
749

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
65.6
0.37
1.2
54.5
43.1
Major BPS
69.6
0.49
1.1
69.5
34
Major PPT
79.8
0.67
0.8
73.6
30.1
Minor 5ss
37.7
-1.4
3.3
52.5
44.1
Minor BPS
60.9
0.42
1.7
75.74
40.7

Associated Gene:

Gene:
SLC8A1
Ensembl Gene ID:
ENSAPLG00000015670
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031245
11947017 - 12053608
106592
ENSAPLT00000024777
11947013 - 12053608
106596
ENSAPLT00000019533
11947013 - 12053608
106596
ENSAPLT00000016363
11947017 - 12044735
97719