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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11963692_11965057_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11963692 - 11965057
Intron Length:
1366

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGATC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
CTTTGCTTTACA
Flanking Amino Acid:
RGVKGGFTITEENEEKQPLT
Intron Amino Acid Position:
705

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.1
0.8
0.9
78.6
35.4
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
86
0.81
0.8
79.7
32.4
Minor 5ss
42.9
-0.8
3.1
59.7
45.1
Minor BPS
60.2
0.32
2.1
75.18
42.3

Associated Gene:

Gene:
SLC8A1
Ensembl Gene ID:
ENSAPLG00000015670
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031245
11947017 - 12053608
106592
ENSAPLT00000024777
11947013 - 12053608
106596
ENSAPLT00000016363
11947017 - 12044735
97719