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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11963692_11967815_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11963692 - 11967815
Intron Length:
4124

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGAGAG
5'SS Class:
major
3'SS Sequence:
CTTTGCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTCAC
U12 Branch Point Sequence:
CTTTGCTTTACA
Flanking Amino Acid:
DPVWLRRGVKEENEEKQPLT
Intron Amino Acid Position:
665

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
0.9
63.8
36.2
Major BPS
52.1
0.05
1.3
57
41.8
Major PPT
86
0.81
0.8
79.7
32.4
Minor 5ss
30.4
-2.2
3.2
37
47.6
Minor BPS
60.2
0.32
2.1
75.18
42.3

Associated Gene:

Gene:
SLC8A1
Ensembl Gene ID:
ENSAPLG00000015670
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019533
11947013 - 12053608
106596