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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11965076_11967815_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
11965076 - 11967815
Intron Length:
2740

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGTGAGAG
5'SS Class:
major
3'SS Sequence:
TGGTTTCATCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTTTCAT
U12 Branch Point Sequence:
TTTTCTCTCATT
Flanking Amino Acid:
DPVWLRRGVKGGFTITEENE
Intron Amino Acid Position:
699

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.5
0.65
0.9
63.8
36.2
Major BPS
82.2
0.8
1.1
85.7
34.9
Major PPT
70.6
0.46
1
63.3
43.2
Minor 5ss
30.4
-2.2
3.2
37
47.6
Minor BPS
58.1
0.34
2
84.17
37.2

Associated Gene:

Gene:
SLC8A1
Ensembl Gene ID:
ENSAPLG00000015670
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016363
11947017 - 12044735
97719
ENSAPLT00000031245
11947017 - 12053608
106592
ENSAPLT00000024777
11947013 - 12053608
106596