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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_11967920_12027612_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
11967920 - 12027612
Intron Length:
59693

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGT|GTAAGTGAA
5'SS Class:
major
3'SS Sequence:
TGTGTTCCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CAATCAT
U12 Branch Point Sequence:
ATGCCAATCATG
Flanking Amino Acid:
GELEFQNDEIVKFITLRILD
Intron Amino Acid Position:
664

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.7
0.58
1.1
70.6
35.4
Major BPS
68.1
0.45
1.1
69.7
35.6
Major PPT
75.6
0.58
0.9
69.2
37.1
Minor 5ss
34
-1.8
3.2
40.8
45.4
Minor BPS
39.7
-0.9
2.1
45.45
40.8

Associated Gene:

Gene:
SLC8A1
Ensembl Gene ID:
ENSAPLG00000015670
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016363
11947017 - 12044735
97719
ENSAPLT00000031245
11947017 - 12053608
106592
ENSAPLT00000024777
11947013 - 12053608
106596
ENSAPLT00000019533
11947013 - 12053608
106596