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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12029449_12044580_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12029449 - 12044580
Intron Length:
15132

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGGGTGGC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGTGCAT
U12 Branch Point Sequence:
CCAGCCTCAGTG
Flanking Amino Acid:
SQETWGFLTKRLRTFGTCSV
Intron Amino Acid Position:
52

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
67.2
38.1
Major BPS
51
0.03
1.5
63.1
44.4
Major PPT
86.7
0.82
0.7
81.5
30.6
Minor 5ss
26.2
-2.7
3.2
34.3
42
Minor BPS
42.5
-0.7
1.9
39.84
44.4

Associated Gene:

Gene:
SLC8A1
Ensembl Gene ID:
ENSAPLG00000015670
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000016363
11947017 - 12044735
97719