Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12029449_12053280_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

12029449 - 12053280

Intron Length:

23832

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GGG|GTAAGTGAA

5'SS Class:

strong_major

3'SS Sequence:

TTTGTCTCTGCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AGTGCAT

U12 Branch Point Sequence:

CCAGCCTCAGTG

Flanking Amino Acid:

ALPTTAETRLGLRTFGTCSV

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.7

0.86

0.9

77.6

32.8

Major BPS

0.03

1.5

63.1

44.4

Major PPT

86.7

0.82

0.7

81.5

30.6

Minor 5ss

31.6

-2.1

3.1

31.7

42.6

Minor BPS

42.5

-0.7

1.9

39.84

44.4

Associated Gene:

Gene:

SLC8A1

Ensembl Gene ID:

ENSAPLG00000015670

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000031245

11947017 - 12053608

106592

ENSAPLT00000024777

11947013 - 12053608

106596

ENSAPLT00000019533

11947013 - 12053608

106596