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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12222990_12227400_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
12222990 - 12227400
Intron Length:
4411

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGA|GTGATCCTT
5'SS Class:
weak_major
3'SS Sequence:
TTTTTTTGTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTAGGGTTAACA
Flanking Amino Acid:
CTLLSHLCCGDFHFQYKIYL
Intron Amino Acid Position:
30

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
56
0.14
1.1
55.3
43.6
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
91.8
0.94
0.8
92.3
26.6
Minor 5ss
39.7
-1.2
3.3
53.1
44.7
Minor BPS
45.9
-0.3
2.4
60.61
45.2

Associated Gene:

Gene:
MRPS5
Ensembl Gene ID:
ENSAPLG00000002557
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002588
12222901 - 12255530
32630