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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12225620_12227383_F

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
12225620 - 12227383
Intron Length:
1764

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCGGTTAA
5'SS Class:
major
3'SS Sequence:
CATTTCAAGGTAG|T
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
GTAGGGTTAACA
Flanking Amino Acid:
LSRRVMILLEFFFLFSFHFQ
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.3
0.52
1.3
71.1
37.5
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
59.3
0.21
1.1
56.2
38.7
Minor 5ss
33.5
-1.9
3
40.4
45.8
Minor BPS
45.9
-0.3
2.4
60.61
45.2

Associated Gene:

Gene:
MRPS5
Ensembl Gene ID:
ENSAPLG00000002557
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040180
12225506 - 12255530
30025