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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12228122_12232812_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12228122 - 12232812
Intron Length:
4691

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCCCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
TTTCTCCCAACA
Flanking Amino Acid:
LDPPDPGPNGETYEDFETRV
Intron Amino Acid Position:
170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
78.7
0.65
0.8
74.5
29.3
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
54.9
0.15
1.9
73.95
37.2

Associated Gene:

Gene:
MRPS5
Ensembl Gene ID:
ENSAPLG00000002557
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040180
12225506 - 12255530
30025
ENSAPLT00000002588
12222901 - 12255530
32630
ENSAPLT00000040627
12225629 - 12255530
29902