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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12250321_12254737_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12250321 - 12254737
Intron Length:
4417

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATCAC
U12 Branch Point Sequence:
AATCACATAATG
Flanking Amino Acid:
TTIRMKKQNKGYGLHCHRAI
Intron Amino Acid Position:
226

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
85.1
25.8
Major BPS
70.5
0.51
1
72
33.1
Major PPT
93.3
0.97
0.6
89.3
19.4
Minor 5ss
35.1
-1.7
2.7
42.4
44.3
Minor BPS
48
-0.2
1.8
55.14
39.4

Associated Gene:

Gene:
MRPS5
Ensembl Gene ID:
ENSAPLG00000002557
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040180
12225506 - 12255530
30025
ENSAPLT00000002588
12222901 - 12255530
32630
ENSAPLT00000040627
12225629 - 12255530
29902