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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12254875_12255305_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12254875 - 12255305
Intron Length:
431

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGATTAC
5'SS Class:
major
3'SS Sequence:
CGTCTGCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTTCTCTTCCCT
Flanking Amino Acid:
RALFKGLTQQETHQQLANEK
Intron Amino Acid Position:
272

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.2
0.64
1
71.7
34.8
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
67.8
0.4
0.9
57.8
38.5
Minor 5ss
38.5
-1.3
3.2
51.5
45.7
Minor BPS
44.4
-0.3
3.6
80.65
41.4

Associated Gene:

Gene:
MRPS5
Ensembl Gene ID:
ENSAPLG00000002557
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040627
12225629 - 12255530
29902
ENSAPLT00000040180
12225506 - 12255530
30025
ENSAPLT00000002588
12222901 - 12255530
32630