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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12260253_12260464_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12260253 - 12260464
Intron Length:
212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTCCATTCGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
AAAAAATTAACT
Flanking Amino Acid:
TIYQENIAAVVFAFVATLLY
Intron Amino Acid Position:
148

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.8
77.5
30.7
Major BPS
79
0.72
1
78.4
31.2
Major PPT
78
0.63
0.8
73.8
29.9
Minor 5ss
31.9
-2.1
3.3
40.3
40.2
Minor BPS
50.7
0.1
1.8
68.52
40.9

Associated Gene:

Gene:
MAL
Ensembl Gene ID:
ENSAPLG00000002880
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000002911
12260178 - 12261095
918