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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12305650_12306052_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
12305650 - 12306052
Intron Length:
403

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGGCAG
5'SS Class:
major
3'SS Sequence:
CTCCCTGTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTCAT
U12 Branch Point Sequence:
TTTTTGTCATTC
Flanking Amino Acid:
QVSHSQVQDQGGVPQVFLTA
Intron Amino Acid Position:
460

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.7
0.65
1.1
60.5
45.8
Major BPS
84.8
0.86
1.1
85.7
34.9
Major PPT
67.8
0.4
1
64
36.7
Minor 5ss
29.7
-2.3
3.2
30.2
42.9
Minor BPS
45.8
-0.3
2.3
65.67
40.8

Associated Gene:

Gene:
SRF
Ensembl Gene ID:
ENSAPLG00000003320
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003395
12304822 - 12313287
8466