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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12316745_12316836_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12316745 - 12316836
Intron Length:
92

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCGGTCGG
5'SS Class:
major
3'SS Sequence:
GCGCTGCCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CGCTCAC
U12 Branch Point Sequence:
ACCTCGCTCACC
Flanking Amino Acid:
ALSLSKDVYNSEYYHFRQAW
Intron Amino Acid Position:
1013

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
67.2
0.41
1.4
54.5
49.7
Major BPS
57.5
0.19
1.1
60.7
37.6
Major PPT
61.7
0.26
0.9
53.8
36.6
Minor 5ss
27.6
-2.6
2.9
32.8
42
Minor BPS
41.2
-0.7
2.5
52.72
44.9

Associated Gene:

Gene:
PTK7
Ensembl Gene ID:
ENSAPLG00000003379
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003473
12315599 - 12326603
11005