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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12317164_12317512_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
12317164 - 12317512
Intron Length:
349

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTAAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
GTCTGTCTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAG
U12 Branch Point Sequence:
CGCCTCTGAGCT
Flanking Amino Acid:
HYMVLEYVDLGDLKQFLRIS
Intron Amino Acid Position:
936

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
65.7
40
Major BPS
55.1
0.13
1.5
54.7
43.1
Major PPT
70
0.45
0.9
61.7
40
Minor 5ss
28.7
-2.4
3.5
34.2
43.1
Minor BPS
46.3
-0.2
1.7
58.64
44.2

Associated Gene:

Gene:
PTK7
Ensembl Gene ID:
ENSAPLG00000003379
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003473
12315599 - 12326603
11005