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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_3_12321532_12321746_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
12321532 - 12321746
Intron Length:
215

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACACGGC
5'SS Class:
major
3'SS Sequence:
GTGTGGTTGGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTGCAA
U12 Branch Point Sequence:
GTGTTTGCAAAG
Flanking Amino Acid:
KILDPSKLLPRIQIMPNGSL
Intron Amino Acid Position:
695

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.4
0.43
1.1
55
43
Major BPS
65.8
0.39
1.4
77.7
37.1
Major PPT
63
0.29
1.2
57.5
47.4
Minor 5ss
35
-1.7
3.6
50.3
46.3
Minor BPS
40.4
-0.8
2.1
44.72
41.6

Associated Gene:

Gene:
PTK7
Ensembl Gene ID:
ENSAPLG00000003379
Chromosome:
3

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003473
12315599 - 12326603
11005